Index

C

circ_corr() (in module spykes.utils)

compile() (spykes.ml.tensorflow.sparse_filtering.SparseFiltering method) convolve_with_temporal_basis() (spykes.ml.strf.STRF method)

D

decode() (spykes.ml.neuropop.NeuroPop method)

design_prior_covariance() (spykes.ml.strf.STRF method) display() (spykes.ml.neuropop.NeuroPop method)

F

fit() (spykes.ml.neuropop.NeuroPop method) (spykes.ml.tensorflow.sparse_filtering.SparseFiltering method)

G

get_all_psth() (spykes.plot.popvis.PopVis method) get_data_directory() (in module spykes.config) get_home_directory() (in module spykes.config) get_psth() (spykes.plot.neurovis.NeuroVis method)

get_raster() (spykes.plot.neurovis.NeuroVis method) get_sort_indices() (in module spykes.utils) get_spikecounts() (spykes.plot.neurovis.NeuroVis method) grad_slow_exp() (in module spykes.utils)

L

load_neuropixels_data() (in module spykes.io.datasets) load_reaching_data() (in module spykes.io.datasets) load_reaching_xy() (in module spykes.io.datasets)

load_reward_data() (in module spykes.io.datasets) load_spikefinder_data() (in module spykes.io.datasets) log_likelihood() (in module spykes.utils)

M

make_2d_gaussian() (spykes.ml.strf.STRF method) make_cosine_basis() (spykes.ml.strf.STRF method)

make_gaussian_basis() (spykes.ml.strf.STRF method) make_image_from_spatial_basis() (spykes.ml.strf.STRF method) make_raised_cosine_temporal_basis() (spykes.ml.strf.STRF method)

N

n_neurons (spykes.plot.popvis.PopVis attribute) name (spykes.plot.popvis.PopVis attribute)

NeuroPop (class in spykes.ml.neuropop) NeuroVis (class in spykes.plot.neurovis)

P

plot_heat_map() (spykes.plot.popvis.PopVis method) plot_population_psth() (spykes.plot.popvis.PopVis method) plot_psth() (spykes.plot.neurovis.NeuroVis method) plot_raster() (spykes.plot.neurovis.NeuroVis method)

PoissonLayer (class in spykes.ml.tensorflow.poisson_models) PopVis (class in spykes.plot.popvis) predict() (spykes.ml.neuropop.NeuroPop method) project_to_spatial_basis() (spykes.ml.strf.STRF method)

S

score() (spykes.ml.neuropop.NeuroPop method) set_matplotlib_defaults() (in module spykes.utils) set_params() (spykes.ml.neuropop.NeuroPop method) simulate() (spykes.ml.neuropop.NeuroPop method) slow_exp() (in module spykes.utils) sparse_filtering_loss() (in module spykes.ml.tensorflow.sparse_filtering) SparseFiltering (class in spykes.ml.tensorflow.sparse_filtering) spykes.config (module)

spykes.io.datasets (module) spykes.ml.neuropop (module) spykes.ml.strf (module) spykes.ml.tensorflow.poisson_models (module) spykes.ml.tensorflow.sparse_filtering (module) spykes.plot.neurovis (module) spykes.plot.popvis (module) spykes.utils (module) STRF (class in spykes.ml.strf)

T

train_test_split() (in module spykes.utils)

V

visualize_gaussian_basis() (spykes.ml.strf.STRF method)